Weighted sequence graphs: Boosting iterated dynamic programming using locally suboptimal solutions
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Publication:1868715
DOI10.1016/S0166-218X(02)00288-3zbMath1020.92011WikidataQ56881278 ScholiaQ56881278MaRDI QIDQ1868715
Benno Schwikowski, Martin Vingron
Publication date: 28 April 2003
Published in: Discrete Applied Mathematics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/s0166-218x(02)00288-3
algorithms; dynamic programming; evolutionary trees; multiple alignments; phylogenetic trees; computational molecular biology; tree alignment program
05C90: Applications of graph theory
90C39: Dynamic programming
92C40: Biochemistry, molecular biology
05C20: Directed graphs (digraphs), tournaments
92-08: Computational methods for problems pertaining to biology
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Cites Work
- RNA secondary structures and their prediction
- Sequence comparison with concave weighting functions
- The Steiner tree problem
- Efficient methods for multiple sequence alignment with guaranteed error bounds
- Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignment
- Aligning sequences via an evolutionary tree
- Technical Note—Determining All Optimal and Near-Optimal Solutions when Solving Shortest Path Problems by Dynamic Programming
- Minimal Mutation Trees of Sequences
- Theoretical Improvements in Algorithmic Efficiency for Network Flow Problems
- Algorithms on Strings, Trees and Sequences
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