RPYFMM: parallel adaptive fast multipole method for Rotne-Prager-Yamakawa tensor in biomolecular hydrodynamics simulations

DOI10.1016/j.cpc.2018.02.005zbMath1498.76002arXiv1711.02976WikidataQ91149608 ScholiaQ91149608MaRDI QIDQ2102473

Yanyan Li

Publication date: 28 November 2022

Published in: Computer Physics Communications (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1711.02976

zbMATH Keywords

fast multipole method; distributed computing; Brownian dynamics; Rotne-Prager-Yamakawa tensor; dashmm; hydrodynamics interactions

Mathematics Subject Classification ID

76-04: Software, source code, etc. for problems pertaining to fluid mechanics

Related Items

A Kernel-Independent Treecode for General Rotne-Prager-Yamakawa Tensor, A scalable computational platform for particulate Stokes suspensions, A hierarchical matrix approach for computing hydrodynamic interactions, Kernel aggregated fast multipole method. Efficient summation of Laplace and Stokes kernel functions

Uses Software

• RPYFMM

Cites Work

• Unnamed Item
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• A Fast Adaptive Multipole Algorithm for Particle Simulations
• Brownian diffusion of particles with hydrodynamic interaction
• Revision of DASHMM: Dynamic Adaptive System for Hierarchical Multipole Methods
• DASHMM: Dynamic Adaptive System for Hierarchical Multipole Methods
• A fast algorithm for particle simulations