Efficient numerical algorithms based on difference potentials for chemotaxis systems in 3D

DOI10.1007/S10915-019-00928-ZzbMath1418.92003arXiv1811.03557OpenAlexW2962829881WikidataQ128354464 ScholiaQ128354464MaRDI QIDQ2316209

Yekaterina Epshteyn, Qing Xia

Publication date: 26 July 2019

Published in: Journal of Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1811.03557

zbMATH Keywords

domain decompositionspherical harmonicsparallel computingfinite volumefinite differencespectral approximationchemotaxis modelsirregular geometryCartesian meshesmesh adaptivityconvection-diffusion-reaction systemsdifference potentials methodpositivity-preserving algorithms

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Spectral, collocation and related methods for initial value and initial-boundary value problems involving PDEs (65M70) Numerical methods for partial differential equations, initial value and time-dependent initial-boundary value problems (65M99) Computational methods for problems pertaining to biology (92-08) Cell movement (chemotaxis, etc.) (92C17)

Related Items (11)

A 3D mathematical model of coupled stem cell-nutrient dynamics in myocardial regeneration therapy ⋮ Local-basis difference potentials method for elliptic PDEs in complex geometry ⋮ Difference potentials method for models with dynamic boundary conditions and bulk-surface problems ⋮ Error analysis of symmetric linear/bilinear partially penalized immersed finite element methods for Helmholtz interface problems ⋮ Finite element approximation of a Keller-Segel model with additional self- and cross-diffusion terms and a logistic source ⋮ Keller-Segel chemotaxis models: a review ⋮ Fully discrete stabilized mixed finite element method for chemotaxis equations on surfaces ⋮ An efficient reformulation of the difference potentials method for interface problems with a jump in the source term ⋮ Difference potentials method for the nonlinear convection-diffusion equation with interfaces ⋮ High order solution to exterior 3D wave equation by the method of difference potentials ⋮ Non-iterative domain decomposition for the Helmholtz equation with strong material discontinuities

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• High-order numerical schemes based on difference potentials for 2D elliptic problems with material interfaces
• Numerical simulation of chemotaxis models on stationary surfaces
• Algorithms composition approach based on difference potentials method for parabolic problems
• Fully discrete analysis of a discontinuous finite element method for the keller-segel chemotaxis model
• Initiation of slime mold aggregation viewed as an instability
• Model for chemotaxis
• Non-oscillatory central differencing for hyperbolic conservation laws
• A second-order positivity preserving central-upwind scheme for chemotaxis and haptotaxis models
• A user's guide to PDE models for chemotaxis
• Nonlinear aspects of chemotaxis
• From 1970 until present: The Keller-Segel model in chemotaxis and its consequences. I
• High-order numerical methods for 2D parabolic problems in single and composite domains
• Local discontinuous Galerkin method for the Keller-Segel chemotaxis model
• High-order positivity-preserving hybrid finite-volume-finite-difference methods for chemotaxis systems
• Discrete-in-time random particle blob method for the Keller-Segel equation and convergence analysis
• From 1970 until present: the Keller-Segel model in chemotaxis and its consequences. II
• A positivity-preserving finite element method for chemotaxis problems in 3D
• Upwind-difference potentials method for Patlak-Keller-Segel chemotaxis model
• Towards the ultimate conservative difference scheme. V. A second-order sequel to Godunov's method
• High-order numerical solution of the Helmholtz equation for domains with reentrant corners
• High-order accurate methods based on difference potentials for 2D parabolic interface models
• A flux-corrected finite element method for chemotaxis problems
• Method of Difference Potentials and Its Applications
• FFT, FMM, or Multigrid? A comparative Study of State-Of-the-Art Poisson Solvers for Uniform and Nonuniform Grids in the Unit Cube
• Random walk with persistence and external bias
• A random particle blob method for the Keller-Segel equation and convergence analysis
• A hybrid variational principle for the Keller–Segel system in ℝ²
• High Resolution Schemes Using Flux Limiters for Hyperbolic Conservation Laws
• The Variational Formulation of the Fokker--Planck Equation
• On the Artificial Compression Method for Second-Order Nonoscillatory Central Difference Schemes for Systems of Conservation Laws
• Positivity-preserving and asymptotic preserving method for 2D Keller-Segal equations
• A review of numerical methods for nonlinear partial differential equations
• Spherical Radial Basis Functions, Theory and Applications
• New Interior Penalty Discontinuous Galerkin Methods for the Keller–Segel Chemotaxis Model
• Fractional step methods applied to a chemotaxis model

This page was built for publication: Efficient numerical algorithms based on difference potentials for chemotaxis systems in 3D