Reverse-engineering of polynomial dynamical systems

DOI10.1016/j.aam.2006.08.004zbMath1129.93026arXivq-bio/0605032MaRDI QIDQ2467344

Reinhard C. Laubenbacher, Brandilyn Stigler, Abdul Salam Jarrah, Michael Stillman

Publication date: 21 January 2008

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/q-bio/0605032

zbMATH Keywords

decomposition; monomial ideal; finite field; gene regulatory network; finite dynamical system; reverse-engineering

Mathematics Subject Classification ID

92B20: Neural networks for/in biological studies, artificial life and related topics

93C35: Multivariable systems, multidimensional control systems

13P10: Gröbner bases; other bases for ideals and modules (e.g., Janet and border bases)

Related Items

Algebraic Models and Their Use in Systems Biology, Computing Linear Extensions for Polynomial Posets Subject to Algebraic Constraints, Probability estimates for reachability of linear systems defined over finite fields, Noise-tolerant algebraic method for reconstruction of nonlinear dynamical systems, Inferring biologically relevant models: nested canalyzing functions, The neural ring: an algebraic tool for analyzing the intrinsic structure of neural codes, Parameter estimation for Boolean models of biological networks, Reduction of Boolean network models, Geometric characterization of data sets with unique reduced Gröbner bases, Why did the shape of your network change? (On detecting network anomalies via non-local curvatures), Neural codes and the factor complex, On the dynamics of endomorphisms of finite groups, The Minimal Hitting Set Generation Problem: Algorithms and Computation, Quantifier Elimination over Finite Fields Using Gröbner Bases

Uses Software

• Macaulay2

Cites Work

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