Molecular distance geometry methods: from continuous to discrete
From MaRDI portal
Publication:3087839
DOI10.1111/j.1475-3995.2009.00757.xzbMath1219.90177WikidataQ62562185 ScholiaQ62562185MaRDI QIDQ3087839
Leo Liberti, Antonio Mucherino, Nelson F. Maculan, Carlile C. Lavor
Publication date: 17 August 2011
Published in: International Transactions in Operational Research (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1111/j.1475-3995.2009.00757.x
90C35: Programming involving graphs or networks
Related Items
Lower Bounds on the Number of Realizations of Rigid Graphs, The Tropical Cayley--Menger Variety, On the Composition of Convex Envelopes for Quadrilinear Terms, Preface, Cycle-based formulations in distance geometry, Discretization orders for protein side chains, Discretization vertex orders in distance geometry, New error measures and methods for realizing protein graphs from distance data, On the computation of protein backbones by using artificial backbones of hydrogens, Discretization orders for distance geometry problems, The discretizable molecular distance geometry problem, Calculating the possible conformations arising from uncertainty in the molecular distance geometry problem using constraint interval analysis, Clifford algebra and the discretizable molecular distance geometry problem, A symmetry-based splitting strategy for discretizable distance geometry problems, Recent advances on the interval distance geometry problem, Minimal NMR distance information for rigidity of protein graphs, Oriented conformal geometric algebra and the molecular distance geometry problem, Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures, Preface: Special issue dedicated to distance geometry, The discretizable distance geometry problem, Recent advances on the discretizable molecular distance geometry problem, A cycle-based formulation for the distance geometry problem, A quantum approach to the discretizable molecular distance geometry problem, The referenced vertex ordering problem: theory, applications, and solution methods, The \(K\)-discretization and \(K\)-incident graphs for discretizable distance geometry, A constrained interval approach to the generalized distance geometry problem, An application-based characterization of dynamical distance geometry problems, Distance geometry and data science, On the optimality of finding DMDGP symmetries, Barvinok's naive algorithm in distance geometry, On the polynomiality of finding \(^K\text{DMDGP}\) re-orders, Geometric algebra to model uncertainties in the discretizable molecular distance geometry problem, The interval branch-and-prune algorithm for the discretizable molecular distance geometry problem with inexact distances, On the number of realizations of certain Henneberg graphs arising in protein conformation, Solving Distance Geometry Problem with Inexact Distances in Integer Plane, Optimal partial discretization orders for discretizable distance geometry, Diagonally Dominant Programming in Distance Geometry, Distance Geometry on the Sphere, Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint
Cites Work
- Unnamed Item
- Unnamed Item
- A linear-time algorithm for solving the molecular distance geometry problem with exact inter-atomic distances
- Solving molecular distance geometry problems by global optimization algorithms
- Theory of semidefinite programming for sensor network localization
- Rigid versus unique determination of protein structures with geometric buildup
- Combining variable neighborhood search and estimation of distribution algorithms in the protein side chain placement problem
- Extending the geometric build-up algorithm for the molecular distance geometry problem
- Double variable neighbourhood search with smoothing for the molecular distance geometry problem
- Isotropic effective energy simulated annealing searches for low energy molecular cluster states
- A parallel build-up algorithm for global energy minimizations of molecular clusters using effective energy simulated annealing
- Solving spread spectrum radar polyphase code design problem by tabu search and variable neighbourhood search.
- A geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data
- Solving large scale molecular distance geometry problems by a smoothing technique via the Gaussian transform and D.C. programming
- Global optimization of mixed-integer nonlinear programs: a theoretical and computational study
- An updated geometric build-up algorithm for solving the molecular distance geometry problems with sparse distance data
- Application of deterministic low-discrepancy sequences in global optimization
- Remarks to Maurice Frechet's article ``Sur la definition axiomatique d'une classe d'espaces vectoriels distancies applicables vectoriellement sur l'espace de Hilbert
- An Alternating Projection Algorithm for Computing the Nearest Euclidean Distance Matrix
- Branching and bounds tighteningtechniques for non-convex MINLP
- A Branch‐and‐Prune algorithm for the Molecular Distance Geometry Problem
- A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
- Rigid and Flexible Frameworks
- Conditions for Unique Graph Realizations
- Global Continuation for Distance Geometry Problems
- Large-Scale Molecular Optimization from Distance Matrices by a D.C. Optimization Approach
- The Molecule Problem: Exploiting Structure in Global Optimization
- The Effective Energy Transformation Scheme as a Special Continuation Approach to Global Optimization with Application to Molecular Conformation