The Mathematics of Phylogenomics

DOI10.1137/050632634zbMath1107.92016arXivmath/0409132OpenAlexW2036594861MaRDI QIDQ3427764

Lior Pachter, Bernd Sturmfels

Publication date: 27 March 2007

Published in: SIAM Review (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/math/0409132

zbMATH Keywords

hidden Markov modelalgebraic varietiesgenetic codesequence alignmentgenomicsphylogeneticsalgebraic statisticscodonsphylognetic combinatoricsultraconservation

Mathematics Subject Classification ID

Problems related to evolution (92D15) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Related Items (max. 100)

Topics on phylogenetic algebraic geometry ⋮ A branch-price-and-cut algorithm for the minimum evolution problem ⋮ Reliable root detection with the qd-algorithm: When Bernoulli, Hadamard and Rutishauser cooperate ⋮ A tutorial on the balanced minimum evolution problem ⋮ On some optimisation models in a fuzzy-stochastic environment ⋮ The mystery of two straight lines in bacterial genome statistics ⋮ The case for algebraic biology: from research to education ⋮ On dissimilarity vectors of general weighted trees ⋮ The balanced minimum evolution problem under uncertain data ⋮ Sets of double and triple weights of trees ⋮ On the frontiers of polynomial computations in tropical geometry ⋮ The Balanced Minimum Evolution Problem ⋮ Phylogenetics of Indo-European language families via an algebro-geometric analysis of their syntactic structures ⋮ A Fuzzy Goal Programming Approach for Fuzzy Multiobjective Stochastic Programming through Expectation Model

Uses Software

• fastDNAml
• OEIS

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