From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis

DOI10.1007/11767589_11zbMath1234.68298WikidataQ63241845 ScholiaQ63241845MaRDI QIDQ3618705

David Gilbert, Monika Heiner

Publication date: 2 April 2009

Published in: Petri Nets and Other Models of Concurrency - ICATPN 2006 (Search for Journal in Brave)

Full work available at URL: http://eprints.gla.ac.uk/3476/1/gilbert.3476.pdf

Mathematics Subject Classification ID

92C40: Biochemistry, molecular biology

68Q85: Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.)

65Y15: Packaged methods for numerical algorithms

65L99: Numerical methods for ordinary differential equations

Related Items

Individuals, populations and fluid approximations: a Petri net based perspective, Hybrid representation and simulation of stiff biochemical networks, IDD-based model validation of biochemical networks, Petri nets for modelling metabolic pathways: a survey, Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights, Hybrid Petri net based modeling for biological pathway simulation, A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models, Modeling biological gradient formation: combining partial differential equations and Petri nets, A Petri net approach to the study of persistence in chemical reaction networks, Charlie – An Extensible Petri Net Analysis Tool, How Might Petri Nets Enhance Your Systems Biology Toolkit

Uses Software

• GEPASI