Genomic Scaffold Filling: A Progress Report

DOI10.1007/978-3-319-39817-4_2zbMath1475.68472OpenAlexW2498338562MaRDI QIDQ4632164

Binhai Zhu

Publication date: 26 April 2019

Published in: Frontiers in Algorithmics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-39817-4_2

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08) Algorithms on strings (68W32)

Related Items (2)

A new approximation algorithm for contig-based genomic scaffold filling ⋮ Comparing incomplete sequences via longest common subsequence

Cites Work

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• The Exemplar Breakpoint Distance for Non-trivial Genomes Cannot Be Approximated
• On the Approximability of Comparing Genomes with Duplicates
• On Syntactic versus Computational Views of Approximability
• Color-coding
• An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies
• A Retrospective on Genomic Preprocessing for Comparative Genomics
• Genomic Scaffold Filling Revisited.
• The Approximability of the Exemplar Breakpoint Distance Problem

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