Framework for kernel regularization with application to protein clustering

DOI10.1073/PNAS.0505411102zbMath1135.62345OpenAlexW2130185724WikidataQ33919999 ScholiaQ33919999MaRDI QIDQ5385850

Fan Lü, Sündüz Keleş, Stephen J. Wright, Grace Wahba

Publication date: 7 May 2008

Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1073/pnas.0505411102

zbMATH Keywords

classificationsequence dataconvex cone programmingdissimilarity informationtrace penalty

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Convex programming (90C25) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40)

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Identifying 3D Genome Organization in Diploid Organisms via Euclidean Distance Geometry ⋮ Localization from incomplete noisy distance measurements ⋮ Unnamed Item ⋮ An implementable proximal point algorithmic framework for nuclear norm minimization ⋮ Indefinite Proximity Learning: A Review ⋮ Encoding dissimilarity data for statistical model building ⋮ Comment ⋮ A remark on global positioning from local distances ⋮ Finding Low-Rank Solutions via Nonconvex Matrix Factorization, Efficiently and Provably

Uses Software

• SDPT3

Cites Work

• Unnamed Item
• Solving semidefinite-quadratic-linear programs using SDPT3
• Visualization methodology for multidimensional scaling
• Some results on Tchebycheffian spline functions and stochastic processes
• Practical Approximate Solutions to Linear Operator Equations When the Data are Noisy
• Soft and hard classification by reproducing kernel Hilbert space methods
• Multicategory Support Vector Machines
• Efficient quadratic regularization for expression arrays

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