fabMix

swMATH32111CRANfabMixMaRDI QIDQ43822

Overfitting Bayesian Mixtures of Factor Analyzers with Parsimonious Covariance and Unknown Number of Components

Panagiotis Papastamoulis

Last update: 12 February 2024

Copyright license: GNU General Public License, version 2.0

Software version identifier: 5.0, 4.3, 4.4, 4.5, 4.6, 5.1

Source code repository: https://github.com/cran/fabMix

Description

Model-based clustering of multivariate continuous data using Bayesian mixtures of factor analyzers (Papastamoulis (2019) <doi:10.1007/s11222-019-09891-z> (2018) <doi:10.1016/j.csda.2018.03.007>). The number of clusters is estimated using overfitting mixture models (Rousseau and Mengersen (2011) <doi:10.1111/j.1467-9868.2011.00781.x>): suitable prior assumptions ensure that asymptotically the extra components will have zero posterior weight, therefore, the inference is based on the “alive” components. A Gibbs sampler is implemented in order to (approximately) sample from the posterior distribution of the overfitting mixture. A prior parallel tempering scheme is also available, which allows to run multiple parallel chains with different prior distributions on the mixture weights. These chains run in parallel and can swap states using a Metropolis-Hastings move. Eight different parameterizations give rise to parsimonious representations of the covariance per cluster (following Mc Nicholas and Murphy (2008) <doi:10.1007/s11222-008-9056-0>). The model parameterization and number of factors is selected according to the Bayesian Information Criterion. Identifiability issues related to label switching are dealt by post-processing the simulated output with the Equivalence Classes Representatives algorithm (Papastamoulis and Iliopoulos (2010) <doi:10.1198/jcgs.2010.09008>, Papastamoulis (2016) <doi:10.18637/jss.v069.c01>).

Cites work

• Asymptotic Behaviour of the Posterior Distribution in Overfitted Mixture Models
• label.switching: An R Package for Dealing with the Label Switching Problem in MCMC Outputs
• Parsimonious Gaussian mixture models
• Clustering multivariate data using factor analytic Bayesian mixtures with an unknown number of components
• Overfitting Bayesian mixtures of factor analyzers with an unknown number of components
• An Artificial Allocations Based Solution to the Label Switching Problem in Bayesian Analysis of Mixtures of Distributions

Described by source

• Clustering multivariate data using factor analytic Bayesian mixtures with an unknown number of components

Related Items (3)

On the identifiability of Bayesian factor analytic models ⋮ On Bayesian analysis of parsimonious Gaussian mixture models ⋮ bpgmm

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