SimInf (Q26820)

From MaRDI portal
Revision as of 22:25, 5 March 2024 by Import240305080343 (talk | contribs) (Added link to MaRDI item.)
A Framework for Data-Driven Stochastic Disease Spread Simulations
Language Label Description Also known as
English
SimInf
A Framework for Data-Driven Stochastic Disease Spread Simulations

    Statements

    0 references
    0 references
    9.5.0
    23 January 2023
    0 references
    1.0.0
    8 January 2016
    0 references
    2.0.0
    4 May 2016
    0 references
    3.0.0
    29 January 2017
    0 references
    4.0.0
    21 March 2017
    0 references
    5.0.0
    13 June 2017
    0 references
    5.1.0
    18 October 2017
    0 references
    6.0.0
    21 April 2018
    0 references
    6.1.0
    13 August 2018
    0 references
    6.2.0
    20 November 2018
    0 references
    6.3.0
    26 May 2019
    0 references
    6.4.0
    12 November 2019
    0 references
    6.5.0
    29 March 2020
    0 references
    6.5.1
    1 April 2020
    0 references
    7.0.0
    23 May 2020
    0 references
    7.0.1
    18 June 2020
    0 references
    8.0.0
    13 September 2020
    0 references
    8.1.0
    18 October 2020
    0 references
    8.2.0
    6 December 2020
    0 references
    8.3.0
    25 June 2021
    0 references
    8.3.2
    30 June 2021
    0 references
    8.4.0
    19 September 2021
    0 references
    9.0.0
    20 April 2022
    0 references
    9.1.0
    8 June 2022
    0 references
    9.2.0
    3 September 2022
    0 references
    9.3.1
    7 October 2022
    0 references
    9.4.0
    6 January 2023
    0 references
    9.6.0
    20 December 2023
    0 references
    0 references
    0 references
    20 December 2023
    0 references
    Provides an efficient and very flexible framework to conduct data-driven epidemiological modeling in realistic large scale disease spread simulations. The framework integrates infection dynamics in subpopulations as continuous-time Markov chains using the Gillespie stochastic simulation algorithm and incorporates available data such as births, deaths and movements as scheduled events at predefined time-points. Using C code for the numerical solvers and 'OpenMP' (if available) to divide work over multiple processors ensures high performance when simulating a sample outcome. One of our design goals was to make the package extendable and enable usage of the numerical solvers from other R extension packages in order to facilitate complex epidemiological research. The package contains template models and can be extended with user-defined models. For more details see the paper by Widgren, Bauer, Eriksson and Engblom (2019) <doi:10.18637/jss.v091.i12>. The package also provides functionality to fit models to time series data using the Approximate Bayesian Computation Sequential Monte Carlo ('ABC-SMC') algorithm of Toni and others (2009) <doi:10.1098/rsif.2008.0172>.
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references