Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation

DOI10.1137/21M1456832zbMath1498.92086arXiv2111.01399OpenAlexW3210470230MaRDI QIDQ5868540

Marcio Gameiro, Lun Zhang, Shane Kepley, Tomáš Gedeon, Bree Cummins, Konstantin Mischaikow

Publication date: 21 September 2022

Published in: SIAM Journal on Applied Dynamical Systems (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2111.01399

zbMATH Keywords

network dynamicsmathematical biologygene regulation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08) Systems biology, networks (92C42)

Related Items (1)

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Uses Software

• DSGRN

Cites Work

• Unnamed Item
• Dynamics of actively regulated gene networks
• Global dynamics for steep nonlinearities in two dimensions
• Lattice structures for attractors. I
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• Joint realizability of monotone Boolean functions
• Introduction to Focus Issue: Quantitative Approaches to Genetic Networks
• Stability and Bifurcations of Equilibria in Networks with Piecewise Linear Interactions
• Computing Linear Extensions for Polynomial Posets Subject to Algebraic Constraints
• Combinatorial Representation of Parameter Space for Switching Networks
• Equilibria and their Stability in Networks with Steep Sigmoidal Nonlinearities

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