sctransform (Q88874)

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Variance Stabilizing Transformations for Single Cell UMI Data
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sctransform
Variance Stabilizing Transformations for Single Cell UMI Data

    Statements

    0.3.5
    21 September 2022
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    0.1.0
    18 November 2018
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    0.2.0
    12 April 2019
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    0.2.1
    17 December 2019
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    0.3.1
    8 October 2020
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    0.3.2
    16 December 2020
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    0.3.3
    13 January 2022
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    0.3.4
    21 August 2022
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    0.3
    20 September 2020
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    0.4.0
    19 September 2023
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    0.4.1
    19 October 2023
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    19 October 2023
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    A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija (2019) <doi:10.1186/s13059-019-1874-1>, and Choudhary and Satija (2022) <doi:10.1186/s13059-021-02584-9> for more details.
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