batchmix

Semi-Supervised Bayesian Mixture Models Incorporating Batch Correction

Stephen Coleman, Chris Wallace, Paul D.w. Kirk

Last update: 25 February 2024

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.0.1, 2.0.0, 2.0.1, 2.1.0

Description

Semi-supervised and unsupervised Bayesian mixture models that simultaneously infer the cluster/class structure and a batch correction. Densities available are the multivariate normal and the multivariate t. The model sampler is implemented in C++. This package is aimed at analysis of low-dimensional data generated across several batches. See Coleman et al. (2022) <doi:10.1101/2022.01.14.476352> for details of the model.

Cites work

A semi-supervised Bayesian mixture modelling approach for joint batch correction and classification

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