Quartet

CRANQuartetMaRDI QIDQ103568

Comparison of Phylogenetic Trees Using Quartet and Split Measures

Martin R. Smith

Last update: 9 February 2024

Software version identifier: 1.2.5, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.1.0, 1.2.0, 1.2.2, 1.2.4, 1.2.6

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Description

Calculates the number of four-taxon subtrees consistent with a pair of cladograms, calculating the symmetric quartet distance of Bandelt & Dress (1986), Reconstructing the shape of a tree from observed dissimilarity data, Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>, and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for computing the quartet and triplet distances between binary or general trees, Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157> for pairs of binary trees.

Cites work

• Reconstructing the shape of a tree from observed dissimilarity data
• tqDist: a library for computing the quartet and triplet distances between binary or general trees