rliger

CRANrligerMaRDI QIDQ127666

Linked Inference of Genomic Experimental Relationships

Joshua D. Welch, Chao Gao, Jialin Liu, Joshua Sodicoff, Velina Kozareva, Evan MacOsko, Yichen Wang

Last update: 8 November 2023

Software version identifier: 1.0.0, 0.5.0, 1.0.0, 1.0.1

Copyright license: GNU General Public License, version 3.0

Description

Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.

Cites work

• Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity
• Jointly defining cell types from multiple single-cell datasets using LIGER