scBSP

CRANscBSPMaRDI QIDQ5976078

A Fast Tool for Single-Cell Spatially Variable Genes Identifications on Large-Scale Data

Jinpu Li

Last update: 9 February 2024

Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier: 0.0.1

Description

Identifying spatially variable genes is critical in linking molecular cell functions with tissue phenotypes. This package utilizes a granularity-based dimension-agnostic tool, single-cell big-small patch (scBSP), implementing sparse matrix operation and KD tree method for distance calculation, for the identification of spatially variable genes on large-scale data. The detailed description of this method is available at Wang, J. and Li, J. et al. 2023 (Wang, J. and Li, J. (2023), <doi:10.1038/s41467-023-43256-5>).

Cites work

• Dimension-agnostic and granularity-based spatially variable gene identification using BSP

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