Meta_Album_PRT_Micro
Dataset:6037273
OpenML44278MaRDI QIDQ6037273FDOQ6037273RO-CrateQ6037273
OpenML dataset with id 44278
Ihsan Ullah
Full work available at URL: https://api.openml.org/data/v1/download/22110978/Meta_Album_PRT_Micro.arff
Upload date: 28 October 2022
Copyright license: Creative Commons Attribution-NonCommercial 4.0 International
Dataset Characteristics
Number of classes: 20
Number of features: 3 (numeric: 1, symbolic: 0 and in total binary: 0 )
Number of instances: 800
Number of instances with missing values: 800
Number of missing values: 800
Meta-Album Subcellular Human Protein Dataset (Micro)
* This dataset is a subset of the Subcellular dataset in the Protein Atlas project(https://www.proteinatlas.org/). The original dataset, which stems from the Human Protein Atlas Image Classification Kaggle competition(https://www.kaggle.com/competitions/human-protein-atlas-image-classification), comprises 31 072 RGBY images of size 512x512 px, each of which belongs to one or more out of 28 classes. The labels correspond to protein organelle localizations. For Meta-Album, we performed two modifications: (1), to turn the dataset into a multi-class dataset, we dropped all images belonging to more than a single class and also those images that belong to classes with less than 40 members; (2) we converted the remaining images into RGB simply by dropping the yellow channel; this was also a common practice in the competition. Finally, and as for all datasets in Meta-Album, the images from the original dataset were resized to 128x128 image size.
Dataset Details
![1]
Meta Album ID: MCR.PRT Meta Album URL: https://meta-album.github.io/datasets/PRT.html Domain ID: MCR Domain Name: Microscopy Dataset ID: PRT Dataset Name: Subcellular Human Protein Short Description: Subcellular protein patterns in human cells \# Classes: 20 \# Images: 800 Keywords: human protein, subcellular Data Format: images Image size: 128x128
License (original data release): CC BY-SA 3.0 License URL(original data release): https://www.proteinatlas.org/about/licence
License (Meta-Album data release): CC BY-SA 3.0 License URL (Meta-Album data release): https://www.proteinatlas.org/about/licence
Source: The Human Protein Atlas Source URL: https://proteinatlas.org https://www.kaggle.com/c/human-protein-atlas-image-classification
Original Author: Peter J Thul, Lovisa Akesson, Mikaela Wiking, Diana Mahdessian, Aikaterini Geladaki, Hammou Ait Blal, Tove Alm, Anna Asplund, Lars Bjork, Lisa Breckels, and others Original contact: contact@proteinatlas.org
Meta Album author: Felix Mohr Created Date: 01 June 2022 Contact Name: Felix Mohr Contact Email: meta-album@chalearn.org Contact URL: https://meta-album.github.io/
Cite this dataset
``` @article{thul2017subcellular,
title={A subcellular map of the human proteome},
author={Thul, Peter J and Akesson, Lovisa and Wiking, Mikaela and Mahdessian, Diana and Geladaki, Aikaterini and Ait Blal, Hammou and Alm, Tove and Asplund, Anna and Bjork, Lars and Breckels, Lisa M},
journal={Science},
volume={356},
number={6340},
year={2017},
publisher={American Association for the Advancement of Science}
}
```
Cite Meta-Album
``` @inproceedings{meta-album-2022,
title={Meta-Album: Multi-domain Meta-Dataset for Few-Shot Image Classification},
author={Ullah, Ihsan and Carrion, Dustin and Escalera, Sergio and Guyon, Isabelle M and Huisman, Mike and Mohr, Felix and van Rijn, Jan N and Sun, Haozhe and Vanschoren, Joaquin and Vu, Phan Anh},
booktitle={Thirty-sixth Conference on Neural Information Processing Systems Datasets and Benchmarks Track},
url = {https://meta-album.github.io/},
year = {2022}
}
```
More
For more information on the Meta-Album dataset, please see the [NeurIPS 2022 paper] For details on the dataset preprocessing, please see the [supplementary materials] Supporting code can be found on our [GitHub repo] Meta-Album on Papers with Code [Meta-Album]
Other versions of this dataset**
ROCrate
What is a RO-Crate?
A RO-Crate is a standardized research object package used to bundle data together with rich machine-readable metadata. Each RO-Crate contains:
- the files belonging to the dataset (e.g. CSVs, images, code, documentation)
- a ro-crate-metadata.json file describing the content, provenance, and context
- persistent identifiers and references to related research objects (e.g. software, publications)
This ensures that the dataset can be easily reused, cited, validated, and interpreted in a reproducible manner. More information can be found here.
Download
You can download a RO-Crate for this dataset here: Download RO-Crate
HINT: The RO-Crate is created dynamically, so it could take up to 30 seconds until the downloads starts.
This page was built for dataset: Meta_Album_PRT_Micro
![[1]](https://meta-album.github.io/assets/img/samples/PRT.png){kind=link}