The following pages link to APBS (Q17905):
Displaying 50 items.
- Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy (Q311614) (← links)
- SDPBS web server for calculation of electrostatics of ionic solvated biomolecules (Q326615) (← links)
- A boundary integral Poisson-Boltzmann solvers package for solvated bimolecular simulations (Q326632) (← links)
- Parallel higher-order boundary integral electrostatics computation on molecular surfaces with curved triangulation (Q346360) (← links)
- A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules (Q347826) (← links)
- Multiscale geometric modeling of macromolecules. I: Cartesian representation (Q348531) (← links)
- New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics (Q349451) (← links)
- A weighted adaptive least-squares finite element method for the Poisson-Boltzmann equation (Q426497) (← links)
- A new analysis of electrostatic free energy minimization and Poisson-Boltzmann equation for protein in ionic solvent (Q457589) (← links)
- A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver (Q463018) (← links)
- Two-scale finite element Green's function approximations with applications to electrostatic potential computation (Q469643) (← links)
- A biomolecular electrostatics solver using python, GPUs and boundary elements that can handle solvent-filled cavities and stern layers (Q525761) (← links)
- Parallel Newton-Krylov-Schwarz algorithms for the three-dimensional Poisson-Boltzmann equation in numerical simulation of colloidal particle interactions (Q536953) (← links)
- A Poisson-Boltzmann solver on irregular domains with Neumann or Robin boundary conditions on non-graded adaptive grid (Q544559) (← links)
- Browndye: A software package for Brownian dynamics (Q548955) (← links)
- Multiscale molecular dynamics using the matched interface and boundary method (Q621913) (← links)
- A second-order discretization of the nonlinear Poisson-Boltzmann equation over irregular geometries using non-graded adaptive Cartesian grids (Q630460) (← links)
- A fast variational method for the construction of resolution adaptive \(C^2\)-smooth molecular surfaces (Q649401) (← links)
- Finite element approximation to a finite-size modified Poisson-Boltzmann equation (Q649960) (← links)
- Physical modeling of aqueous solvation (Q657804) (← links)
- A new boundary integral equation for molecular electrostatics with charges over whole space (Q657897) (← links)
- Symmetry reduced dynamics of charged molecular strands (Q717161) (← links)
- Molecular dynamics simulations of tubulin structure and calculations of electrostatic properties of microtubules (Q814202) (← links)
- Poisson-Boltzmann equation boundary conditions for biological applications (Q814208) (← links)
- A boundary element formulation of protein electrostatics with explicit ions (Q876460) (← links)
- A finite difference method and analysis for 2D nonlinear Poisson-Boltzmann equations (Q878141) (← links)
- A rapid boundary integral equation technique for protein electrostatics (Q886050) (← links)
- Modeling electrokinetic flows by the smoothed profile method (Q969452) (← links)
- A finite element recovery approach to Green's function approximations with applications to electrostatic potential computation (Q1004012) (← links)
- A two-component matched interface and boundary (MIB) regularization for charge singularity in implicit solvation (Q1684978) (← links)
- Fractional Poisson-Nernst-Planck model for ion channels. I: Basic formulations and algorithms (Q1693424) (← links)
- An implicit boundary integral method for computing electric potential of macromolecules in solvent (Q1709017) (← links)
- Local and parallel finite element algorithms for eigenvalue problems (Q1862925) (← links)
- Accurate evaluation of electrostatics for macromolecules in solution (Q1884171) (← links)
- Goal-oriented adaptivity and multilevel preconditioning for the Poisson-Boltzmann equation (Q1930931) (← links)
- Biomolecular electrostatics using a fast multipole BEM on up to 512 GPUs and a billion unknowns (Q1943150) (← links)
- On regularization of charge singularities in solving the Poisson-Boltzmann equation with a smooth solute-solvent boundary (Q1981060) (← links)
- A data-driven framework for sparsity-enhanced surrogates with arbitrary mutually dependent randomness (Q1987969) (← links)
- An efficient finite element iterative method for solving a nonuniform size modified Poisson-Boltzmann ion channel model (Q2083633) (← links)
- Model reduction-based initialization methods for solving the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations (Q2125420) (← links)
- Regularization methods for the Poisson-Boltzmann equation: comparison and accuracy recovery (Q2127026) (← links)
- Efficient calculation of fully resolved electrostatics around large biomolecules (Q2134490) (← links)
- On variational iterative methods for semilinear problems (Q2194832) (← links)
- The de Rham-Hodge analysis and modeling of biomolecules (Q2195628) (← links)
- The calculus of boundary variations and the dielectric boundary force in the Poisson-Boltzmann theory for molecular solvation (Q2239302) (← links)
- A hybrid solver of size modified Poisson-Boltzmann equation by domain decomposition, finite element, and finite difference (Q2295320) (← links)
- On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver (Q2311657) (← links)
- Fast and scalable algorithms for constructing solvent-excluded surfaces of large biomolecules (Q2312106) (← links)
- A super-Gaussian Poisson-Boltzmann model for electrostatic free energy calculation: smooth dielectric distribution for protein cavities and in both water and vacuum states (Q2313961) (← links)
- An optimal Schwarz preconditioner for a class of parallel adaptive finite elements (Q2357422) (← links)