AEON: attractor bifurcation analysis of parametrised Boolean networks

DOI10.1007/978-3-030-53288-8_28MaRDI QIDQ2225126zbMATH OpenOpenAlexFDO

Authors Nikola Beneš, Jakub Kadlecaj, Samuel Pastva, D. Šafránek, Luboš Brim

Publication date 4 February 2021

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/978-3-030-53288-8_28

zbMATH Keywords

attractorsbifurcation analysisBoolean networks

Mathematics Subject Classification ID

Gradient-like behavior; isolated (locally maximal) invariant sets; attractors, repellers for topological dynamical systems (37B35) Dynamical aspects of attractors and their bifurcations (37G35) Networks and circuits as models of computation; circuit complexity (68Q06)

Recommendations

• Aeon 2021: bifurcation decision trees in Boolean networks
• Bifurcations in Boolean Networks
• Attractors in Boolean networks: a tutorial
• Compositional analysis of Boolean networks using local fixed-point iterations
• Algorithms for Inference, Analysis and Control of Boolean Networks

Cited in

(12)

• Constrained Kripke structure for identifying parameters of biological models
• Variable-depth simulation of most permissive Boolean networks
• Computing bottom SCCs symbolically using transition guided reduction
• An open problem: why are motif-avoidant attractors so rare in asynchronous Boolean networks?
• scientific article; zbMATH DE number 7566051 (Why is no real title available?)
• Variable stabilisation in Boolean monotonic model pools
• Symbolic coloured SCC decomposition
• Aeon 2021: bifurcation decision trees in Boolean networks
• Tackling universal properties of minimal trap spaces of Boolean networks
• Representing abstract dialectical frameworks with binary decision diagrams
• Compositional analysis of Boolean networks using local fixed-point iterations
• Phenotype control of partially specified Boolean networks

Describes a project that uses

Uses Software

• Aeon

This page was built for publication: AEON: attractor bifurcation analysis of parametrised Boolean networks

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2225126)