A Bayesian extension of the hypergeometric test for functional enrichment analysis
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Cites work
- A Bayesian Mixture Model for Differential Gene Expression
- A Direct Approach to False Discovery Rates
- Bayes and empirical-Bayes multiplicity adjustment in the variable-selection problem
- Bayesian joint modeling of multiple gene networks and diverse genomic data to identify target genes of a transcription factor
- Defining functional distance using manifold embeddings of gene ontology annotations
- Detecting differential gene expression with a semiparametric hierarchical mixture method
- Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
- On testing the significance of sets of genes
- Proper multivariate conditional autoregressive models for spatial data analysis
- Properties of the Extended Hypergeometric Distribution
- Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis
- Sampling Methods for Wallenius' and Fisher's Noncentral Hypergeometric Distributions
- Significance analysis of microarrays applied to the ionizing radiation response
Cited in
(6)- A multi-functional analyzer uses parameter constraints to improve the efficiency of model-based gene-set analysis
- Statistical methods for the analysis of high-throughput data based on functional profiles derived from the Gene Ontology
- A statistical framework for testing functional categories in microarray data
- An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets
- New Trends in the Analysis of Functional Genomic Data
- Bayesian functional enrichment analysis for the Reactome database
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