A Semiparametric Kernel Independence Test With Application to Mutational Signatures

DOI10.1080/01621459.2020.1871357MaRDI QIDQ5881952zbMATH OpenOpenAlexFDO

Authors

Publication date 14 March 2023

Published in Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/01621459.2020.1871357

zbMATH Keywords

excess zerosmutational signatureRosenblatt-Parzen kernel estimatortest of independence

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

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• A general class of zero-or-one inflated beta regression models
• A Non-Parametric Test of Independence
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• A nonparametric test for equality of distributions with mixed categorical and continuous data
• A quadratic measure of deviation of two-dimensional density estimates and a test of independence
• Applied nonparametric econometrics
• Brownian distance covariance
• Central limit theorem for integrated square error of multivariate nonparametric density estimators
• Consistent nonparametric tests of independence
• Constructions for a bivariate beta distribution
• Cross-validation Bandwidth Matrices for Multivariate Kernel Density Estimation
• Distribution Free Tests of Independence Based on the Sample Distribution Function
• Equivalence between tie-corrected Spearman test and a chi-square test in a fourfold contingency table
• Equivalence of distance-based and RKHS-based statistics in hypothesis testing
• From Distance Correlation to Multiscale Graph Correlation
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• Learning the parts of objects by non-negative matrix factorization
• Measuring and testing dependence by correlation of distances
• On a weighted bootstrap approximation of the \(L_p\) norms of kernel density estimators
• On Estimation of a Probability Density Function and Mode
• Remarks on Some Nonparametric Estimates of a Density Function
• Testing independence by nonparametric kernel method

Cited in

(3)

• Multivariate association analysis with somatic mutation data
• Dissecting Gene Expression Heterogeneity: Generalized Pearson Correlation Squares and the K -Lines Clustering Algorithm
• Analytical plug-in method for kernel density estimator applied to genetic neutrality study

Describes a project that uses

Uses Software

• R
• pyuvdata
• Python

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