A new protein graph model for function prediction

DOI10.1016/J.COMPBIOLCHEM.2012.01.003MaRDI QIDQ2359336zbMATH OpenOpenAlexWikidataFDO

Authors Marco A. Alvarez, Changhui Yan

Publication date 28 June 2017

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2012.01.003

zbMATH Keywords

support vector machineprotein function predictiongraph kernel

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Predicting protein-protein interactions using graph invariants and a neural network
• Computational Science - ICCS 2004
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Cites work

• Graph Embedding in Vector Spaces by Means of Prototype Selection
• On graph kernels: hardness results and efficient alternatives.
• Spectral embedding of graphs.
• Structured machine learning: the next ten years

Cited in

(5)

• Predicting protein-protein interactions using graph invariants and a neural network
• Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers
• Estimating the parameters of a model for protein–protein interaction graphs
• ProTranslator: zero-shot protein function prediction using textual description
• Graph prototypical contrastive learning

Describes a project that uses

Uses Software

• BLAST

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