A quadratic approximation for protein sequence to structure mapping.

DOI10.1007/BF02936189MaRDI QIDQ1432811zbMATH OpenOpenAlexFDO

Authors Jae Heon Yun, Sei-Young Chung, Seyoung Oh

Publication date 22 June 2004

Published in Journal of Applied Mathematics and Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/bf02936189

zbMATH Keywords

quadratic approximationsequence to structure mapping

Mathematics Subject Classification ID

Applications of functional analysis in probability theory and statistics (46N30) Computational methods for problems pertaining to biology (92-08) Biophysics (92C05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Cites work

• Finding the lowest free energy conformation of a protein is an NP-hard problem: Proof and implications
• scientific article; zbMATH DE number 3497315 (Why is no real title available?)
• Optimization by simulated annealing

Cited in

(3)

• PROSIGN: a method for protein secondary structure assignment based on three-dimensional coordinates of consecutive \(C_\alpha \) atoms
• Estimating polypeptide \(\alpha\)-carbon distances from multiple sequence alignments
• Comparison study of two kernel-based learning algorithms for predicting the distance range between antibody interface residues and antigen surface

Describes a project that uses

Uses Software

• QPOPT
• SQOPT

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