A semiparametric Bayesian model for comparing DNA copy numbers

DOI10.1214/15-BJPS283MaRDI QIDQ318959zbMATH OpenFDO

Authors Yuan Ji, Veerabhadran Baladandayuthapani, Luis E. Nieto-Barajas

Publication date 6 October 2016

Published in Brazilian Journal of Probability and Statistics (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.bjps/1469807216

zbMATH Keywords

Bayesian nonparametricsrandom effectsDirichlet process mixture modelbivariate spike and slab priorcircular binary segmentationcomparative genomic hybridization

Mathematics Subject Classification ID

Nonparametric estimation (62G05) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 774881 (Why is no real title available?)
• A Bayesian analysis of some nonparametric problems
• A Predictive Approach to Model Selection
• A semiparametric Bayesian model for randomised block designs
• Bayesian Hidden Markov Modeling of Array CGH Data
• Bayesian Variable Selection in Linear Regression
• Bayesian random segmentation models to identify shared copy number aberrations for array CGH data
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Ferguson distributions via Polya urn schemes
• Hidden Markov models approach to the analysis of array CGH data
• Markov chains for exploring posterior distributions. (With discussion)
• Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
• Spatial smoothing and hot spot detection for CGH data using the fused lasso

Cited in

(4)

• Bayesian–frequentist hybrid model with application to the analysis of gene copy number changes
• A random coefficients model for regional co-expression associated with DNA copy number
• Modeling association between DNA copy number and gene expression with constrained piecewise linear regression splines
• A Semiparametric Bayesian Model for Repeatedly Repeated Binary Outcomes

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