A simulated annealing algorithm for maximum likelihood pedigree reconstruction

DOI10.1016/S0040-5809(02)00048-5MaRDI QIDQ849461zbMATH OpenOpenAlexWikidataFDO

Authors Anthony Almudevar

Publication date 31 October 2006

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/s0040-5809(02)00048-5

zbMATH Keywords

simulated annealingmaximum likelihoodpedigree reconstructionenumeration of feasible predigrees

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Approximation methods and heuristics in mathematical programming (90C59) Problems related to evolution (92D15)

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Cites work

• scientific article; zbMATH DE number 3758132 (Why is no real title available?)
• scientific article; zbMATH DE number 41891 (Why is no real title available?)
• scientific article; zbMATH DE number 3495928 (Why is no real title available?)
• A bootstrap assessment of variability in pedigree reconstruction based on genetic markers
• Equation of state calculations by fast computing machines
• Gene Identities and Multiple Relationships
• Optimization by simulated annealing
• Partition-distance: A problem and class of perfect graphs arising in clustering
• The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction

Cited in

(15)

• Reconstruction of pedigrees in clonal plant populations
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• Efficient maximum likelihood pedigree reconstruction
• On the choice of prior density for the Bayesian analysis of pedigree structure
• Capacitated clustering problem in computational biology: combinatorial and statistical approach for sibling reconstruction
• Reconstruction of pedigrees in clonal plant populations
• On Approximating an Implicit Cover Problem in Biology
• On approximating four covering and packing problems
• An information theoretic approach to pedigree reconstruction
• Bayesian pedigree inference with small numbers of single nucleotide polymorphisms via a factor-graph representation
• On the use of dense SNP marker data for the identification of distant relative pairs
• Phenotype space and kinship assignment for the simpson index
• A graphical approach to relatedness inference
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees

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