Analysis of proteomics data: an improved peak alignment approach

DOI10.1214/14-EJS900EMaRDI QIDQ470446zbMATH OpenFDO

Authors Ian Zhang, Xueli Liu

Publication date 12 November 2014

Published in Electronic Journal of Statistics (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.ejs/1414588158

zbMATH Keywords

functional datacurve alignmentpairwisetime varyinglandmark registrationspectrometry data

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection
• Applied functional data analysis. Methods and case studies
• Curve alignment by moments
• Detecting and aligning peaks in mass spectrometry data with applications to MALDI
• Pairwise curve synchronization for functional data
• Proteomics profiles from mass spectrometry
• Time ordering of gene coexpression

Cited in

(15)

• Detecting and aligning peaks in mass spectrometry data with applications to MALDI
• A Bayesian approach for the alignment of high-resolution NMR spectra
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• Meta-analysis of peptides to detect protein significance
• Alignment of protein mass spectrometry data by integrated Markov chain shifting method
• Wavelets and projecting spectrum binning for proteomic data processing
• A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spec\-tro\-metry
• A statistical method for chromatographic alignment of LC-MS data
• Analysis of proteomics data: block \(k\)-mean alignment
• Analysis of proteomics data: phase amplitude separation using an extended Fisher-Rao metric
• Analysis of proteomics data: Bayesian alignment of functions
• Proteomics profiles from mass spectrometry
• Rejoinder: Analysis of proteomics data
• Mass spectra alignments and their significance
• Combinatorial Pattern Matching

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• fda (R)

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