Analyzing multiple-probe microarray: estimation and application of gene expression indexes

DOI10.1111/J.1541-0420.2012.01727.XMaRDI QIDQ4649055zbMATH OpenOpenAlexWikidataFDO

Authors M. Maadooliat, Jianhua Z. Huang, Jianhua Hu

Publication date 19 November 2012

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://epublications.marquette.edu/cgi/viewcontent.cgi?article=1119&context=mscs_fac

zbMATH Keywords

differential expression detectionfold changemultivariate expression indexnormalizationprofile likelihoodtransformation model

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

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Cites work

• A Limited Memory Algorithm for Bound Constrained Optimization
• A systematic statistical linear modeling approach to oligonucleotide array experiments
• Estimation of Expression Indexes for Oligonucleotide Arrays Using the Singular Value Decomposition
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
• Fast computation of low-rank matrix approximations
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
• Singular value decomposition-based alternative splicing detection
• The analysis of gene expression data. Methods and software

Cited in

(7)

• Multicriteria gene screening for analysis of differential expression with DNA microarrays
• Combined amplification and molecular classification for gene expression diagnostics
• Omnibus testing and gene filtration in microarray data analysis
• A simulation-based approach for evaluating microarray analyses
• Cross-study validation and combined analysis of gene expression microarray data
• scientific article; zbMATH DE number 7448521 (Why is no real title available?)
• Analysis of microarray gene expression data using information theory and stochastic algorithm

Describes a project that uses

Uses Software

• LBFGS-B

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