Attenuation Regulation as a Term Rewriting System

DOI10.1007/978-3-540-73433-8_7MaRDI QIDQ5429355zbMATH OpenOpenAlexFDO

Authors Eugene Asarin, Thierry Cachat, A. V. Seliverstov, Tayssir Touili, Vassily Lyubetsky

Publication date 29 November 2007

Published in Algebraic Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/0706.2126

zbMATH Keywords

probabilistic term rewriting systems

Mathematics Subject Classification ID

Grammars and rewriting systems (68Q42) Biochemistry, molecular biology (92C40)

Abstract: The classical attenuation regulation of gene expression in bacteria is considered. We propose to represent the secondary RNA structure in the leader region of a gene or an operon by a term, and we give a probabilistic term rewriting system modeling the whole process of such a regulation.

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Cited in

(1)

• Rule-based modeling of transcriptional attenuation at the tryptophan operon

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