Attractor stability in finite asynchronous biological system models

DOI10.1007/S11538-018-00565-XMaRDI QIDQ2417519zbMATH OpenOpenAlexWikidataFDO

Authors Ryan D. Pederson, Henning S. Mortveit

Publication date 12 June 2019

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11538-018-00565-x

zbMATH Keywords

classificationenumerationdiscrete dynamical systemslong-term behaviorBoolean networkssequential dynamical systemsupdate schedulesattractor structures

Mathematics Subject Classification ID

Systems biology, networks (92C42) Attractors of solutions to ordinary differential equations (34D45) Software, source code, etc. for problems pertaining to biology (92-04)

Recommendations

• Study of the Lyapunov stability in a biological model
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• Stability and robustness analysis of a class of cyclic biological systems
• scientific article; zbMATH DE number 1361153

Cites work

• scientific article; zbMATH DE number 45557 (Why is no real title available?)
• Acyclic orientations of random graphs
• An atlas of limit set dynamics for asynchronous elementary cellular automata
• Attractor stability in nonuniform Boolean networks
• Bifurcations in Boolean Networks
• Cycle equivalence of finite dynamical systems containing symmetries
• Cycle equivalence of graph dynamical systems
• Deconstruction and dynamical robustness of regulatory networks: application to the yeast cell cycle networks
• Killing and the Coxeter transformation of Kac-Moody algebras
• On enumeration of conjugacy classes of Coxeter elements
• Posets from admissible Coxeter sequences.
• Update sequence stability in graph dynamical systems

Cited in

(8)

• Attractor analysis of asynchronous Boolean models of signal transduction networks
• Detecting attractors in biological models with uncertain parameters
• Attractor Stability in Finite Asynchronous Biological System Models
• Qualitative analysis of mammalian circadian oscillations: cycle dynamics and robustness
• Relating Attractors and Singular Steady States in the Logical Analysis of Bioregulatory Networks
• Asynchronous, finite dynamical systems
• Lipschitz continuity under toric equivalence for asynchronous Boolean networks
• Global attractivity, I/O monotone small-gain theorems, and biological delay systems

Describes a project that uses

Uses Software

• NetworkX
• gensim
• BoolNet

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