autoGO

Authors Isabella Grassucci, Eleonora Sperandio, Alice Massacci, Lorenzo D'ambrosio, Matteo Pallocca

Last update 19 August 2025

Copyright license MIT license, File License

Software version identifier 0.9.1, PACKAGES.rds, 0.9, 1.0.1, 1.0.3

Description

Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) <doi:10.1186/s13059-014-0550-8>. The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.

Cites work

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

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