BRCore

MaRDI QIDQ7377620CRANFDO

Authors Bolívar Aponte Rolón, Gian Maria Niccolò Benucci, Brandon Kristy, Ashley Shade, Nejc Stopnisek, Adina Howe

Last update 20 May 2026

Copyright license MIT license, File License

Software version identifier 2.0.4, 2.0.5, PACKAGES.rds, 2.0.7

Description

A unified framework for identification and ecological interpretation of core microbiomes across time and space, enhancing robustness and reproducibility in microbiome data analysis. 'BRCore' implements the workflow proposed by Shade and Stopnisek (2019) and incorporates additional rarefaction steps. The proposed workflow aims to identify persistent microbiomes using abundance-occupancy distributions and neutral community model fitting. For more details on abundance-occupancy distributions see Shade A, Stopnisek N (2019) <doi:10.1016/j.mib.2019.09.008>, for neutral models, see Sloan et al. (2006) <doi:10.1111/j.1462-2920.2005.00956.x> and Burns et al. (2015) <doi:10.1038/ismej.2015.142>.

Cites work

• Abundance-occupancy distributions to prioritize plant core microbiome membership
• Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development
• Quantifying the roles of immigration and chance in shaping prokaryote community structure

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