Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE

DOI10.1111/1541-0420.00057MaRDI QIDQ3079135zbMATH OpenOpenAlexWikidataFDO

Authors Jeffrey S. Morris, Keith A. Baggerly, Kevin R. Coombes

Publication date 1 March 2011

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/1541-0420.00057

zbMATH Keywords

Bayesian methodsbioinformaticsmixture distributionsmultinomial distributionSAGEshrinkage estimators

Mathematics Subject Classification ID

Bayesian inference (62F15) Estimation in survival analysis and censored data (62N02) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

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Cites work

• Distribution associated with stochastic processes of gene expression in a single eukaryotic cell
• scientific article; zbMATH DE number 1239310 (Why is no real title available?)
• Minimax multiple shrinkage estimation
• THE POPULATION FREQUENCIES OF SPECIES AND THE ESTIMATION OF POPULATION PARAMETERS

Cited in

(4)

• Bayesian hierarchical modeling and selection of differentially expressed genes for the EST data
• Designing sampling plans to capture rare objects
• Inferences on the number of unseen species and the number of abundant/rare species
• Sampling designs via a multivariate hypergeometric-Dirichlet process model for a multi-species assemblage with unknown heterogeneity

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