Beyond evolutionary trees

DOI10.1007/S11047-009-9156-6MaRDI QIDQ5962068zbMATH OpenOpenAlexFDO

Authors Gianluca Della Vedova, Riccardo Dondi, Tao Jiang, Giulio Pavesi, Yuri Pirola, Lusheng Wang

Publication date 16 September 2010

Published in Natural Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11047-009-9156-6

zbMATH Keywords

evolutionary treeshaplotypesnetworkspedigrees

Mathematics Subject Classification ID

Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.) (68Q10)

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Cites work

• A framework for representing reticulate evolution
• Algorithms on Strings, Trees and Sequences
• Complexity and approximation of the minimum recombinant haplotype configuration problem
• Computing and Combinatorics
• DLS-trees: a model of evolutionary scenarios
• Fast elimination of redundant linear equations and reconstruction of recombination-free Mendelian inheritance on a pedigree
• Finding a maximum compatible tree is NP-hard for sequences and trees
• From Gene Trees to Species Trees
• Inapproximability results for the lateral gene transfer problem
• Reconciling a gene tree to a species tree under the duplication cost model
• Reconciling Gene Trees with Apparent Polytomies
• The haplotyping problem: an overview of computational models and solutions

Cited in

(5)

• Testing fundamental evolutionary hypotheses
• Phylogenetics of artificial manuscripts
• Vertical heredity vs. horizontal gene transfer: a challenge to bacterial classification
• Determining the Evolutionary Tree Using Experiments
• Phylogenetic tree and community structure from a tangled nature model

Describes a project that uses

Uses Software

• RIATA-HGT

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