BinMat
A molecular genetics tool that processes binary data from fragment analysis. It consolidates replicate sample pairs, outputs summary statistics, and produces hierarchical clustering trees and nMDS plots. This package was developed from the publication available here: <doi:10.1016/j.biocontrol.2020.104426>. The GUI version of this package is available on the R Shiny online server at: <https://clarkevansteenderen.shinyapps.io/BINMAT/> or it is accessible via GitHub by typing: shiny::runGitHub("BinMat", "clarkevansteenderen") into the console in R. Two real-world datasets accompany the package: an AFLP dataset of Bunias orientalis samples from Tewes et. al. (2017) <doi:10.1111/1365-2745.12869>, and an ISSR dataset of Nymphaea specimens from Reid et. al. (2021) <doi:10.1016/j.aquabot.2021.103372>. The authors of these publications are thanked for allowing the use of their data.
- Addressing the red flags in cochineal identification: The use of molecular techniques to identify cochineal insects that are used as biological control agents for invasive alien cacti
- Intracontinental plant invader shows matching genetic and chemical profiles and might benefit from high defence variation within populations
- Population genetics of invasive and native Nymphaea mexicana Zuccarini: Taking the first steps to initiate a biological control programme in South Africa
This page was built for software: BinMat
