BioDeepTime: database and compilation code

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DOI10.5281/zenodo.8154672Zenodo8154672MaRDI QIDQ6677306FDOQ6677306

Dataset published at Zenodo repository.

Pincelli Hull, Lee Hsiang Liow, Adam Tomasovych, Lukas Jonkers, Stephen Meyers, Manuel Steinbauer, Miranda Margulis-Ohnuma, Kate Pippenger, Huai-Hsuan M. Huang, Erin E. Saupe, Amelia M. Penny, John W. Williams, Mauro Sugawara, Lin Na, Jansen A. Smith, Moriaki Yasuhara, Marina C. Rillo, Wolfgang Kiessling, Johan Renaudie, Adam T. Kocsis, David Fastovich, Maria Dornelas, Qijian Li, Seth Finnegan

Publication date: 12 July 2023

Copyright license: Creative Commons Attribution 4.0 International



The archive includes copies, compilation code, documentation and temporary data files for the BioDeepTime database. Deposited files: Relational database in SQLite format: biodeeptime_sqlite.zip. Denormalized database in zipped .csv format: biodeeptime_csv.zip Denormalized database in zipped .parquet (v1.0) format: biodeeptime_parquet.zip. Denormalized database in .rds (R version 4.0) format: biodeeptime.rds. Description of tables and columns: biodeeptime.md. Database schema: schema.pdf. Synonymy of sources: Synonymy of sources.xlsx. Change log and known issues: NEWS.md Compilation files: bdt_compilation.zip References in .csv format: references.csv References in .rds format: references.rds Reference bibtex entries: references.bib Bchron ages calculated for Neotoma: neotoma_bchron.rds This repository accompanies the study BioDeepTime: a database of biodiversity time series for modern and fossil assemblages by Smith et al. (In Press).







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