Bioinformatics and computational biology solutions using R and Bioconductor.
Applications of statistics to biology and medical sciences; meta analysis (62P10) Software, source code, etc. for problems pertaining to statistics (62-04) Biochemistry, molecular biology (92C40) Collections of articles of miscellaneous specific interest (00B15) Proceedings, conferences, collections, etc. pertaining to statistics (62-06) Software, source code, etc. for problems pertaining to biology (92-04) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Computational methods for problems pertaining to biology (92-08)
- Scalable genomics with \texttt{R} and bioconductor
- A Regression Modeling Approach to Structured Shrinkage Estimation
- Review of statistical analyses in drug discovery and chemogenomics
- Latent variable modeling paradigms for genotype-trait association studies
- JavaStat: a Java/R-based statistical computing environment
- Data science vs. statistics: two cultures?
- Robust estimation of the parameters of \(g\)-\textit{and}-\(h\) distributions, with applications to outlier detection
- Microarray background correction: maximum likelihood estimation for the normal-exponential convolution
- Estimation procedures for the false discovery rate: a systematic comparison for microarray data
- Measuring and testing homogeneity of distributions by characteristic distance
- More powerful tests for sparse high-dimensional covariances matrices
- Significance tests to identify regulated proteins based on a large number of small samples
- Statistical bioinformatics with R.
- A two-sample test for high-dimensional data with applications to gene-set testing
- Edge-weighting of gene expression graphs
- A statistical framework for the analysis of microarray probe-level data
- Persistence and scientific reproducibility in genome informatics: theory and application
- Projected tests for high-dimensional covariance matrices
- Using GO for statistical analyses
- Bioconductor
- Deriving and comparing the distribution for the number of false positives in single step methods to control \(k\)-FWER
- Doubly stochastic continuous-time hidden Markov approach for analyzing genome tiling arrays
- A mixture factor model with applications to microarray data
- Context-Specific Nested Effects Models
- The Gibbs-plaid biclustering model
- Empirical study for the agreement between statistical methods in quality assessment and control of microarray data
- The Sign Test, Paired Data, and Asymmetric Dependence: A Cautionary Tale
- Empirical characterization of random forest variable importance measures
- Gene expression array exploration using \(\mathcal{K}\)-formal concept analysis
- Neyman's truncation test for two-sample means under high dimensional setting
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- Statistics and data analysis for microarrays using R and Bioconductor. With CD-ROM.
- A statistical perspective on the challenges in molecular microbial biology
- MATHT: a web server for comprehensive transcriptome data analysis
- Dynamic publication media with the COPASI R connector (CoRC)
- Comparing large covariance matrices under weak conditions on the dependence structure and its application to gene clustering
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