celltrackR
Methods for analyzing (cell) motion in two or three dimensions.Available measures include displacement, confinement ratio, autocorrelation,straightness, turning angle, and fractal dimension. Measures can be applied to entire tracks,steps, or subtracks with varying length. While the methodology has been developed forcell trajectory analysis, it is applicable to anything that moves including animals,people, or vehicles.Some of the methodology implemented in this packages was described by: Beauchemin, Dixit, and Perelson (2007) <doi:10.4049/jimmunol.178.9.5505>, Beltman, Maree, and de Boer (2009) <doi:10.1038/nri2638>,Gneiting and Schlather (2004) <doi:10.1137/S0036144501394387>,Mokhtari, Mech, Zitzmann, Hasenberg, Gunzer, and Figge (2013) <doi:10.1371/journal.pone.0080808>,Moreau, Lemaitre, Terriac, Azar, Piel, Lennon-Dumenil, and Bousso (2012) <doi:10.1016/j.immuni.2012.05.014>,Textor, Peixoto, Henrickson, Sinn, von Andrian, and Westermann (2011) <doi:10.1073/pnas.1102288108>, Textor, Sinn, and de Boer (2013) <doi:10.1186/1471-2105-14-S6-S10>, Textor, Henrickson, Mandl, von Andrian, Westermann, de Boer, and Beltman (2014) <doi:10.1371/journal.pcbi.1003752>.
- Analysing immune cell migration
- Analytical results on the Beauchemin model of lymphocyte migration
- Automated Characterization and Parameter-Free Classification of Cell Tracks Based on Local Migration Behavior
- Characterizing T Cell Movement within Lymph Nodes in the Absence of Antigen
- Defining the quantitative limits of intravital two-photon lymphocyte tracking
- Dynamic In Situ Cytometry Uncovers T Cell Receptor Signaling during Immunological Synapses and Kinapses In Vivo
- Random Migration and Signal Integration Promote Rapid and Robust T Cell Recruitment
- Stochastic Models That Separate Fractal Dimension and the Hurst Effect
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