CiberATAC software and manuscript datasets

From MaRDI portal


DOI10.5281/zenodo.5865863ZenodoMaRDI QIDQ6695090FDO


Authors Hani Goodarzi, Bo Wang, Norihiro Yamaguchi, Kristle Garcia, Johnny Yu, Mehran Karimzadeh, Tanvi Joshi, Ethan Weinberg

Publication date 3 March 2022

Copyright license Creative Commons Attribution 4.0 International


Description

CiberATAC manuscript datasets. pbmc.zip contains datasets for running the CiberATAC tutorial mave_data.zip contains datasets for runnning the CiberATAC variational auto-encoder tutorial _scRNA-seq.RDS files contain Seurat objects of CDX or PDX samples. SW480_scATAC-seq.RDS contains a SingleCellExperiment object of the peak matrix for SW480 CDX samples.











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