Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R

DOI10.1201/9781420069747MaRDI QIDQ3631304zbMATH OpenOpenAlexFDO

Authors Gabriel Valiente

Publication date 5 June 2009

Full work available at URL https://doi.org/10.1201/9781420069747

Mathematics Subject Classification ID

Introductory exposition (textbooks, tutorial papers, etc.) pertaining to computer science (68-01) Searching and sorting (68P10) Graph theory (including graph drawing) in computer science (68R10) Pattern recognition, speech recognition (68T10) Nonnumerical algorithms (68W05) Analysis of algorithms (68W40) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Pattern Discovery in Bioinformatics
• Genomic Perl
• Algorithms in bioinformatics. A practical introduction.
• scientific article; zbMATH DE number 1754502
• Genome-Scale Algorithm Design

Cited in

(3)

• Faster computation of the Robinson-Foulds distance between phylogenetic networks
• comput-biol
• Bounding the SNPR distance between two tree-child networks using generalised agreement forests

Describes a project that uses

Uses Software

• CRAN
• PERL
• Bioconductor
• bioperl
• CPAN
• R

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