Computational methods for asynchronous basins

DOI10.3934/DCDSB.2016103MaRDI QIDQ727917zbMATH OpenOpenAlexWikidataFDO

Authors I. H. Dinwoodie

Publication date 21 December 2016

Published in Discrete and Continuous Dynamical Systems. Series B (Search for Journal in Brave)

Full work available at URL https://doi.org/10.3934/dcdsb.2016103

zbMATH Keywords

asynchronous dynamicsbasin of attractionBoolean networkprime idealsignalling network

Mathematics Subject Classification ID

Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25) Dynamical systems in biology (37N25) Markov processes: estimation; hidden Markov models (62M05)

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Cites work

• A mathematical framework for agent based models of complex biological networks
• An algebraic approach to reverse engineering finite dynamical systems arising from biology
• Attractor analysis of asynchronous Boolean models of signal transduction networks
• Computer algebra in systems biology
• Conditional tests on basins of attraction with finite fields
• Exact tests for singular network data
• scientific article; zbMATH DE number 1515218 (Why is no real title available?)
• scientific article; zbMATH DE number 1560708 (Why is no real title available?)
• Monomials and basin cylinders for network dynamics
• Polynomial dynamical systems in systems biology
• Polynomials for classification trees and applications
• Robustness and fragility of Boolean models for genetic regulatory networks
• Vanishing configurations in network dynamics with asynchronous updates

Cited in

(6)

• Compositional analysis of Boolean networks using local fixed-point iterations
• Drawing the line: basin boundaries in safe Petri nets
• Finding attractors in asynchronous Boolean dynamics
• Vanishing configurations in network dynamics with asynchronous updates
• On the basins of attraction of the regular autonomous asynchronous systems
• Monomials and basin cylinders for network dynamics

Describes a project that uses

Uses Software

• CoCoALib
• ADAM
• ElemStatLearn
• rpart
• BoolNet
• Macaulay2

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