Concurrency in biological modeling: behavior, execution and visualization

DOI10.1016/J.ENTCS.2007.12.009MaRDI QIDQ2870303zbMATH OpenOpenAlexFDO

Authors David Harel, Yaki Setty, Sol Efroni, Naamah Swerdlin, Irun R. Cohen

Publication date 17 January 2014

Published in Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.entcs.2007.12.009

zbMATH Keywords

biological modelingconcurrent modelingreactive animationreactive systemsstatecharts

Mathematics Subject Classification ID

Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Systems biology, networks (92C42)

Recommendations

• scientific article; zbMATH DE number 2090521
• A Hybrid Approach to Modeling Biological Systems
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• scientific article; zbMATH DE number 2156289

Cites work

• GemCell: A generic platform for modeling multi-cellular biological systems
• scientific article; zbMATH DE number 3930354 (Why is no real title available?)
• scientific article; zbMATH DE number 1950545 (Why is no real title available?)
• LSCs: Breathing life into message sequence charts
• Statecharts: a visual formalism for complex systems
• The chemical basis of morphogenesis
• Transactions on Computational Systems Biology III

Describes a project that uses

Uses Software

• GemCell

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