cpam

Authors Luke Yates, Michael Charleston, Jazmine Humphreys, Steven Smith

Last update 27 March 2026

Copyright license GNU General Public License

Software version identifier PACKAGES.rds, 0.1.3, 0.2.0, 0.2.1

Description

Provides a comprehensive framework for time series omics analysis, integrating changepoint detection, smooth and shape-constrained trends, and uncertainty quantification. It supports gene- and transcript-level inferences, p-value aggregation for improved power, and both case-only and case-control designs. It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.

Cites work

Shape-constrained, changepoint additive models for time series omics data with cpam

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