crosshap

Authors Jacob Marsh, Brady Johnston, Jakob Petereit

Last update 31 March 2024

Copyright license MIT license, File License

Software version identifier 1.1.0, 1.2.2, PACKAGES.rds, 1.4.0

Description

A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.

Cites work

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003

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