splice
OpenML dataset with id 46
No author found.
Full work available at URL: https://api.openml.org/data/v1/download/46/splice.arff
Upload date: 6 April 2014
Dataset Characteristics
Number of classes: 3
Number of features: 61 (numeric: 0, symbolic: 61 and in total binary: 0 )
Number of instances: 3,190
Number of instances with missing values: 0
Number of missing values: 0
Author: Genbank. Donated by G. Towell, M. Noordewier, and J. Shavlik Source: UCI) Please cite: None
Primate splice-junction gene sequences (DNA) with associated imperfect domain theory. Splice junctions are points on a DNA sequence at which 'superfluous' DNA is removed during the process of protein creation in higher organisms. The problem posed in this dataset is to recognize, given a sequence of DNA, the boundaries between exons (the parts of the DNA sequence retained after splicing) and introns (the parts of the DNA sequence that are spliced out). This problem consists of two subtasks: recognizing exon/intron boundaries (referred to as EI sites), and recognizing intron/exon boundaries (IE sites). (In the biological community, IE borders are referred to a acceptors while EI borders are referred to as donors.)
All examples taken from Genbank 64.1. Categories "ei" and "ie" include every "split-gene" for primates in Genbank 64.1. Non-splice examples taken from sequences known not to include a splicing site.
Attribute Information
>
1 One of {n ei ie}, indicating the class.
2 The instance name.
3-62 The remaining 60 fields are the sequence, starting at
position -30 and ending at position +30. Each of
these fields is almost always filled by one of
{a, g, t, c}. Other characters indicate ambiguity among
the standard characters according to the following table:
character: meaning
D: A or G or T
N: A or G or C or T
S: C or G
R: A or G
Notes:
- Instance_name is an identifier and should be ignored for modelling
