Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes

DOI10.5281/ZENODO.7459274Zenodo7459274MaRDI QIDQ6673475FDOQ6673475

Dataset published at Zenodo repository.

Ferdinand Marlétaz, Thierry

Publication date: 9 February 2023

Copyright license: Creative Commons Attribution 4.0 International

Description

Supplementary datasets accompanying paper: stage_peaks_anc_sel.xlsx : ATAC peaks with classification, conservation and binding sites Pliv.mfuzz.enrichGO.txt : GO enrichment in MFuzz cluster Pliv_genes_master_filt.xlsx : Gene models with corresponding information bindetect_results_anf.txt : results of TOBIAS hits_pprx_cl0_ord3vrr+Et_red.fa : alignment of homeoboxsequences Pliv_aH2p.gn.gtf.gz : annotation in GTF format Pliv_PqN3S_sm.fa.gz : genome of P. livius ansr_*_network.tsv.gz : Stage specific networks from ANANSE analysis ATAC_pks_normcov.tsv : Coverage of unified peaks for ATAC-seq Cttg_pks_normcov.tsv : Coverage of unified peaks for Cut-and-tag H3K27Ac data lncRNA_stgSpe_fpkm.tsv : Expression levels (FPKM) for predicted lncRNAs for available RNA-seq samples Split_Urchin_FPKMs.clean.txt.gz : Expression levels for unified ATAc-seq peaks following direct and reverse orientation

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