DOI10.5281/ZENODO.8251328Zenodo8251328MaRDI QIDQ6674617FDOQ6674617
Dataset published at Zenodo repository.
Augustin Luna, Yoshitaka Inoue, Favour James
Publication date: 19 July 2023
Copyright license: Creative Commons Attribution 4.0 International
This is a dataset that was generated by integrating the breast cancer (BRCA TCGA) dataset from the cBioPortal (cbioportal.org) and a biological network for node connections from Pathway Commons (www.pathwaycommons.org). Data was preprocessed to form one dataset that could be converted to PyTorch Geometric data objects. This data was retrieved in the CSV format, then processed to form a graph-based dataset for use with Graph Neural Networks (GNN). The dataset contains the gene features of each patient and the overall survival time (in months) of each patient, which are the labels.
This page was built for dataset: brca_tcga_pyg_dataset
