Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish
DOI10.5281/zenodo.11202673Zenodo11202673MaRDI QIDQ6677139FDOQ6677139
Dataset published at Zenodo repository.
Maurine Vilcot, Nadia Faure, Stéphanie Manel, Kimberly R. Andrews, Brian W. Bowen, Fabien Leprieur
Publication date: 16 May 2024
Copyright license: Creative Commons Attribution 4.0 International
This dataset is associated to the following publication: Vilcot M., Faure N., Andrews, K. R., Bowen B. W., Leprieur F., Manel S. (2024) Neutral processes and taxonomic scale drive beta species-genetic diversity correlations in a submesophotic tropical reef fish Data: "Report_DEtel22-6705_SNP_2_ordered_Bowen.csv": SNP data from Dart Sequencing on Etelis coruscans, from Andrews et al. (2020) samples "PA_Mat_GaspObis.RDS": fish species presence data, gathered from an updated version of Albouy et al. (2019) "metadata_samples_full.csv": all Etelis coruscans sample information, from Andrews et al. (2020) and the SEAMOUNTS project "metadata_samples.csv": Etelis coruscans sample information, only for samples that have passed the genetic filtering and were used for subsequent analyses "metadata_stations.csv": sampling station information "Taxonomy_Fishbase.csv": species taxonomic information, downloaded with rfishbase::load_taxa() "traits_Luiz_et_al_2013.csv": species trait information from Luiz et al. (2013) Related dataset: Etelis coruscans SNP data on samples from the SEAMOUNTS project are available at https://doi.org/10.5281/zenodo.11201065 Scripts: Scripts used to reproduce the analyses and figures of the final article are available at https://github.com/mvilcot/etelis_SGDCs References: Albouy, C., Archambault, P., Appeltans, W., Arajo, M. B., Beauchesne, D., Cazelles, K., Cirtwill, A. R., Fortin, M.-J., Galiana, N., Leroux, S. J., Pellissier, L., Poisot, T., Stouffer, D. B., Wood, S. A., Gravel, D. (2019). The marine fish food web is globally connected. Nature Ecology Evolution, 3(8), Article 8.https://doi.org/10.1038/s41559-019-0950-y Andrews, K. R., Copus, J. M., Wilcox, C., Williams, A. J., Newman, S. J., Wakefield, C. B., Bowen, B. W. (2020). Range-Wide population structure of 3 deepwater Eteline snappers across the Indo-Pacific Basin. Journal of Heredity, 111(5), 471‑485.https://doi.org/10.1093/jhered/esaa029 Luiz, O. J., Allen, A. P., Robertson, D. R., Floeter, S. R., Kulbicki, M., Vigliola, L., Becheler, R., Madin, J. S. (2013). Adult and larval traits as determinants of geographic range size among tropical reef fishes. Proceedings of the National Academy of Sciences, 110(41), 16498‑16502. https://doi.org/10.1073/pnas.1304074110 Boettiger, C., Lang, D. T., Wainwright, P. C. (2012). rfishbase: Exploring, manipulating and visualizing FishBase data from R. Journal of Fish Biology, 81(6), 2030‑2039. https://doi.org/10.1111/j.1095-8649.2012.03464.x
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