Global Bee Interaction Data

DOI10.5281/zenodo.14624975Zenodo14624975MaRDI QIDQ6682866FDOQ6682866

Dataset published at Zenodo repository.

Global Biotic Interaction Community, Katja C Seltmann, Jorrit Poelen

Publication date: 9 January 2025

Description

Last modified: January 09, 2025 IntroductionThis dataset comprises all bee interactions indexed by Global Biotic Interactions (GloBI; Poelen et al. 2014). It is published quarterly by the Big Bee Project (Seltmann et al. 2021) to summarize all available knowledge about bee interactions from natural history collections, community science observations (i.e., iNaturalist), and the literature. Interactions include flower visitation, parasitic interactions (mite, viral), lecty, and many others. Data DescriptionPlease see theintegration process pageto better understand how Global Biotic Interactions combines datasets from various sources. The complete interaction dataset for all species can be accessed via https://www.globalbioticinteractions.org/data. Data is filtered for unique records based on the interaction description and source citation. Archives contain full data records and unique filtered records in tab-delimited format. Dataset column name definitions https://api.globalbioticinteractions.org/interactionFieldsorhttps://api.globalbioticinteractions.org/interactionFields Duplicate records occur in the database because more than one provider shares information. This is most frequently occuring in museum specimen data and duplicates can be identified evaluating the institutionCode, collectionCode and catalogNumber fields. The file catalogNumber_counts.tsv groups records by these three fields for this dataset, but does not filter out duplicate records. Additionally, this dataset includes the citation information provided by the data publisher. The provided sourceCitation may not include information about the primary provider (often the natural history collection) the specimen data originates and the catalogNumber should be referenced to understand the original source of the data. If you know of a missing dataset, or wish to share your dataset, please contact us! Metrics Date Total bee records 07-17-2020 232,906 01-24-2021 257,738 11-17-2021 226,160 06-01-2022 286,818 11-07-2022 429,308 01-18-2024 842,819 07-03-2024 1,109,057 01-09-2025 1,223,768 Date Andrenidae Apidae Colletidae Halictidae 07-17-2020 73,463 106,222 20,821 58,880 01-24-2021 77,824 120,919 21,376 63,945 11-17-2021 25,535 134,517 10,568 43,070 06-01-2022 78,016 144,827 20,409 64,054 11-07-2022 84,172 171,378 30,792 79,155 01-18-2024 166,473 334,224 63,847 171,931 07-03-2024 289,400 371,953 83,337 190,562 01-09-2025 204,565 686,195 70,724 241,856 Date Megachilidae Melittidae Stenotritidae 07-17-2020 44,449 2,511 23 01-24-2021 48,856 2,624 18 11-17-2021 37,001 995 9 06-01-2022 54,516 2,994 18 11-07-2022 61,391 2,396 24 01-18-2024 100,814 5,088 442 07-03-2024 162,587 4,964 438 01-09-2025 126,113 5,928 441 Included files filter_and_count_bee_families.sh - script for separating bee records into family and counting number of records for each family citation-count.sh - script for counting citations counts.sh - script for counting number of records per family family_counts.tsv - counts by family unique_citations.tsv - list of references/sources providing bee interaction data and the number of interactions provided by each reference globi-bees-filtered_file.tsv.gz - list of all bee interaction data indexed on Global Biotic Interactions from GloBI version 2025-Jan-09 produced by [filter_and_count_bee_families.sh]. interactions.tsv.gz - archive of the full Global Biotic Interaction dataset on January 9, 2025. Downloaded from https://www.globalbioticinteractions.org Interaction Sources count source 255946 USGS Biodiversity Information Serving Our Nation (BISON) IPT 203993 http://iNaturalist.org is a place where you can record what you see in nature, meet other nature lovers, and learn about the natural world. 113413 Digital Bee Collections Network, 2014 (and updates). Version: 2015-03-18. National Science Foundation grant DBI 0956388; PBI: Phytophagous Insects as a Model Group for Documenting Planetary Biodiversity (Insecta: Heteroptera: Miridae: Orthotylinae, Phylinae). Version: 08 Mar 2016. National Science Foundation grant DBI#0316495; Tri-Trophic Thematic Collection Network, 2014 (and updates). Version: 08 Mar 2016. http://tcn.amnh.org/. National Science Foundation grant(s) EF#1115081, EF#1115103, EF#1115080, EF#1115144, EF#1115191, EF#1115104, EF#1115115 111712 University of Kansas Natural History Museum 95131 ecdysis - a portal for live-managing arthropod occurrence data 74835 Symbiota Collections of Arthropods Network (SCAN) 62736 Frost Entomological Museum, Pennsylvania State University 28517 PaDIL Bee records from the Pests and Diseases Image Library, http://www.padil.gov.au. 27114 Guzman, Laura Melissa; Kelly, Tyler; Elle, Elizabeth, 2022, "A dataset for pollinator diversity and their interactions with plants in the Pacific NorthWest", https://doi.org/10.5683/SP3/WTEZNH, Borealis, V1 24564 University of Michigan Museum of Zoology Insect Division. Full Database Export 2020-11-20 provided by Erika Tucker and Barry Oconner. 23731 Carril OM, Griswold T, Haefner J, Wilson JS. (2018) Wild bees of Grand Staircase-Escalante National Monument: richness, abundance, and spatio-temporal beta-diversity. 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Zenodo. https://doi.org/10.5281/zenodo.7796465 hash://md5/e41e29d8fb3c2d731f292ec08798cf6b hash://md5/05abf23c0b9e5f4bc721ff407455af0a hash://sha256/7a344b858ab8d1daeca1da49843e8bf957f1116ff9e10a29176ab5c02cb49bef 13 Geiselman, Cullen K. Sarah Younger. 2020. Bat Eco-Interactions Database. www.batbase.org 12 Gaden S. Robinson; Phillip R. Ackery; Ian Kitching; George W Beccaloni; Luis M. Hernndez (2023). HOSTS (from HOSTS - a Database of the World's Lepidopteran Hostplants) [Data set resource]. Natural History Museum. https://data.nhm.ac.uk/dataset/hosts/resource/877f387a-36a3-486c-a0c1-b8d5fb69f85a via Natural History Museum (2023). Data Portal query on 1 resources created at 2023-05-24 11:19:42.032183 PID https://doi.org/10.5519/qd.bsucrxdz 12 Gandhi, K. J. K., Herms, D. A. (2009). North American arthropods at risk due to widespread Fraxinus mortality caused by the Alien Emerald ash borer. Biological Invasions, 12(6), 18391846. doi:10.1007/s10530-009-9594-1. 12 Meyer R.S., et al., Beach environmental DNA fills gaps in photographic biomonitoring to track spatiotemporal community turnover across 82 phyla. Environmental DNA, submitted June 3, 2019. 9 Consortium of Small Vertebrate Collections 9 Urban M, Cuzick A, Rutherford K, Irvine A, Pedro H, Pant R, Sadanadan V, Khamari L, Billal S, Mohanty S, Hammond-Kosack KE. PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database. Nucleic Acids Res. 2017 Jan 4;45(D1):D604-D610. doi: 10.1093/nar/gkw1089. Epub 2016 Dec 3. PMID:27915230 8 Sarah E Miller. 7/6/2016. Arctos collection. 5 International Council for the Exploration of the Sea (ICES). Year of The Stomach Datasets. 4 Sarah E Miller. 4/20/2015. Species associations manually extracted from various papers and articles from site https://repository.si.edu 4 Sarah E Miller. 5/28/2015. Arnaud, Paul Henri. A Host-parasite Catalog of North American Tachinidae (Diptera). Washington, D.C.: U.S. Dept. of Agriculture, Science and Education Administration, 1978. 4 Sarah E Miller. 7/7/2016. Text gathered from Wirta, H.K., Vesterinen, E.J., Hambck, P.A., Weingartner, E., Rasmussen, C., Reneerkens, J., Schmidt, N.M., Gilg, O. and Roslin, T., 2015. Exposing the structure of an Arctic food web. Ecology and evolution, 5(17), pp.3842-3856. 4 Semantic Prototypes in Research Ecoinformatics (SPIRE). Data provided by Joel Sachs. See also http://ebiquity.umbc.edu/get/a/publication/297.pdf . 4 University of California Santa Barbara Herbarium 3 Geiselman, Cullen K. and Tuli I. Defex. 2015. Bat Eco-Interactions Database. www.batplant.org 3 Gippet, J.M.W., Bates, O.K., Moulin, J. et al. The global risk of infectious disease emergence from giant land snail invasion and pet trade. Parasites Vectors 16, 363 (2023). https://doi.org/10.1186/s13071-023-06000-y 3 Jorrit H. Poelen. 2017. Species interactions associated with known species interaction datasets. 3 Ministerio del Ambiente, Agua y Transicin Ecolgica de Ecuador - MAATE. 3 Sarah E Miller. 9/15/2016. Species associations extracted from http://parasiticplants.siu.edu/index.html. 3 Sarah E Miller. 9/3/2015. Species associations manually extracted from JSTOR. 3 Schriml, L. M., Arze, C., Nadendla, S., Ganapathy, A., Felix, V., Mahurkar, A., Hall, N. (2009). GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database. Nucleic Acids Research, 38(Database), D754D764. doi:10.1093/nar/gkp832 2 Carnegie Invertebrate Zoology Collection 2 F. Gabriel. Muoz. 2017. Palm-Animal frugivore associations extracted from literature with Biodiversity Observations Miner for SouthEast Asia. 2 Ferrer-Paris, Jos R.; Snchez-Mercado, Ada Y.; Lozano, Cecilia; Zambrano, Liset; Soto, Jos; Baettig, Jessica; Leal, Mara (2014): A compilation of larval host-plant records for six families of butterflies (Lepidoptera: Papilionoidea) from available electronic resources. figshare. http://dx.doi.org/10.6084/m9.figshare.1168861 2 Paleo Digitization Working Group. Biological associations extracted from fossil specimens. 2 Quentin J. Groom. 2020. Bat interation data manually extracted from literature. 2 Sarah E. Miller. 04/14/2015. Extracted from literature Scott, J.A. 1986. The Butterflies of North America. Stanford University Press, Stanford, CA 2 Strona, G., Palomares, M. L. D., Bailly, N., Galli, P., Lafferty, K. D. (2013). Host range, host ecology, and distribution of more than 11 800 fish parasite species. Ecology, 94(2), 544544. doi:10.1890/12-1419.1 2 Thessen AE. 2017. Biotic Interactions in Greenland. GloBI. 10.5281/zenodo.266824 1 Bourlat SJ, Koch M, Kirse A, Langen K, Espeland M, Giebner H, Decher J, Ssymank A, Fonseca VG (2023) Metabarcoding dietary analysis in the insectivorous bat Nyctalus leisleri and implications for conservation. Biodiversity Data Journal 11: e111146. https://doi.org/10.3897/BDJ.11.e111146 1 De Rojas M, Doa J, Dimov I (2020) A comprehensive survey of Rhinonyssid mites (Mesostigmata: Rhinonyssidae) in Northwest Russia: New mite-host associations and prevalence data. Biodiversity Data Journal 8: e49535. https://doi.org/10.3897/BDJ.8.e49535 1 Deans, Andrew (2021). Catalog of Rose Gall, Herb Gall, and Inquiline Gall Wasps (Hymenoptera: Cynipidae) of the United States, Canada, and Mexico 1 Gunther KA et al. 2014 Dietary breadth of grizzly bears in the Greater Yellowstone Ecosystem. Ursus 25(1):60-72 1 HiveTracks WorldFAIR Test Data. 1 Pinnegar, J.K. (2014). DAPSTOM - An Integrated Database Portal for Fish Stomach Records. Version 4.7. Centre for Environment, Fisheries Aquaculture Science, Lowestoft, UK. February 2014, 39pp. 1 Sarah E Miller. 3/4/2015. Species associations manually extracted from http://onlinelibrary.wiley.com/doi/10.1111/j.1474-919X.2009.00907.x/suppinfo. 1 Sarah E Miller. 5/21/2015. Text gathered from http://www.biodiversitylibrary.org/ 1 Vanderweyen A, Fraiture A, Groom Q, Desmet P, Reyserhove L (2019). Catalogue of the Rust Fungi of Belgium. Botanic Garden Meise. 1 Vanderweyen, A., Fraiture, A. (2009). Catalogue des Uredinales de Belgique, 1re partie, Chaconiaceae, Coleosporiaceae, Cronartiaceae, Melampsoraceae, Phragmidiaceae, Pucciniastraceae, Raveneliaceae et Uropyxidaceae. Lejeunia, Revue de Botanique|Vanderweyen, A., Fraiture, A. (2009). Catalogue des Uredinales de Belgique, 2me partie, Pucciniaceae (sauf Puccinia)(suite 2). Lejeunia, Revue de Botanique.|Vanderweyen, A., Fraiture, A. (2012). CATALOGUE DES UREDINALES DE Belgique 3me partie Pucciniaceae (genre Puccinia). Lejeunia, Revue de Botanique. 1 Zeke Marshall. 2021. Species interactions manually extracted from literature. References Poelen JH, Simons JD, Mungall CJ (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2014.08.005 Seltmann KC, Allen J, Brown BV, Carper A, Engel MS, Franz N, Gilbert E, Grinter C, Gonzalez VH, Horsley P, Lee S, Maier C, Miko I, Morris P, Oboyski P, Pierce NE, Poelen J, Scott VL, Smith M, Talamas EJ, Tsutsui ND, Tucker E (2021) Announcing Big-Bee: An initiative to promote understanding of bees through image and trait digitization. Biodiversity Information Science and Standards 5: e74037. https://doi.org/10.3897/biss.5.74037 Poelen, JS Seltmann, KS (2024) Bees Only Please: Bees Only Please: Selecting Hundreds of Thousands of Possible Bee Interactions Using a Laptop, Open Datasets, and Small (but Mighty) Commandline Tools.https://www.globalbioticinteractions.org/2024/06/07/bees-only-please Ascher, J. S. and J. Pickering (2020) Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila).http://www.discoverlife.org/mp/20q?guide=Apoidea_species. Acknowledgements This project is supported by the National Science Foundation. Award numbers:DBI:2102006,DBI:2101929,DBI:2101908,DBI:2101876,DBI:2101875,DBI:2101851,DBI:2101345,DBI:2101913,DBI:2101891andDBI:2101850

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