Linkage maps and genotype data of strawberry produced with skim-sequencing data
DOI10.5281/zenodo.7978964Zenodo7978964MaRDI QIDQ6683452FDOQ6683452
Dataset published at Zenodo repository.
Alejandro Thérèse Navarro, Thijs van Dijk, Johan Willemsen, Peter M Bourke, Paul Arens, Eric van de Weg, Fernanda Alves de Freitas Guedes, Richard G.f. Visser, Chris A. Maliepaard, Richard Finkers
Publication date: 28 May 2023
Copyright license: Creative Commons Attribution 4.0 International
The following set of files contain the results and scripts to produce those results, described in Chapter 5 of the PhD thesis of Alejandro Thrse Navarro, entitled How to map a million markers: linkage mapping of skim-sequencing data in strawberry. In this study, a large dataset of markers produced by whole genome resequecning of a strawberry (Fragariaxananassa) biparental population are used to generate linkage maps. To that end the software Smooth Descentis used, since it is oriented to obtaining linkage maps in usin low quality (error-prone) genotype data. With this methodology we were able to produce a linkage map of 27 out of 28 chromosomes of strawberry which containing 1.85M markers in ~2400 unique genetic mpositions. We also compare this map with a linkage map produced using SNP array data and with the genome sequence assemblyCamarosa.
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